BiobakeryUtils

Contents

• Getting Started
• • Installing julia
  • Making a project
  • Using bioBakery command line tools
  • Using MetaPhlAn and HUMAnN
  • Troubleshooting
• MetaPhlAn Tutorial with BiobakeryUtils.jl
• • Installation and setup
  • Input files
  • Run a single sample
  • Output files
  • Run on multiple cores
  • Run multiple samples
  • Merge outputs
  • Analyze Results
  • Functions and Types
• HUMAnN Tutorial with BiobakeryUtils.jl
• • Installation and setup
  • Running HUMAnN
  • Default outputs
  • Manipulating tables
  • HUMAnN for multiple samples
  • Plotting
  • Functions and types