Microbiome.jl

Description

Microbiome.jl is a package for manipulating and analyzing microbiome and microbial community data.

Installation

Install Microbiome from the Julia REPL:

julia> using Pkg

julia> pkg"add Microbiome"

If you are interested in the cutting edge of the development, please check out the master branch to try new features before release.

julia> pkg"add Microbiome#master"

• Samples and Features
• • Sample types
  • Feature Types
  • Types and Methods
• Working with microbial abundances
• • Accessing CommunityProfile contents
  • Indexing and selecting
  • Working with metadata
  • Importing from tabular data
  • Types and Methods
• Diversity measures on communities and samples
• • Alpha Diversity
  • Beta Diversity